Welcome to the scientific webpage of Michael

Welcome to the scientific webpage of Michael Egmont-Petersen
Welcome to the scientific webpage of Michael Egmont-Petersen. It contains an overview of the publications I have (co­‑)authored and links to most original manuscripts.

During my Ph.D. work and early Post-Doc career, I worked on methods and applications for
Statistical Pattern Recognition Techniques
, especially on
Medical Images
. Later, I entered the field of
Computational Biology
(Genomics), where I worked with (DNA./SNP)
Microarrary
data and
Gene-Expression Microarray
data.
This site contains links both to papers on
Statistical Pattern Recognition
and
Genomics
.

You can contact me via:
michael * egmont-petersen.nl
(with * indicating @)
Publications by Michael Egmont-Petersen
Electronic Reprints
: Single copies of articles can be downloaded and printed for the reader's personal research and study.

Journal papers:
H. Bootsma, M. Egmont-Petersen, P. Hermans. "
Analysis of the in vitro transcriptional response of human pharyngeal epithelial cells to adherent Streptococcus pneumonia: evidence for a distinct response to encapsulated strains

,"
Infection and Immunity
, Vol. 75, No. 11, pp. 5489-5499, 2007. (
,
)
P. Groot, C. Gilissen, M. Egmont-Petersen. "
Error Probabilities for Local Extrema in Gene expression Data
,"
Pattern Recognition Letters
, Vol. 28, No. 15, pp. 2133-2142, 2007. (
,
)
A.P.M. de Brouwer, K.L. Williams, J. Duley, A.B.P. van Kuilenburg, S. Nabuurs, M. Egmont-Petersen, D. Lugtenberg, L. Zoetekouw, M.J.G. Banning, M. Roeffen, B.C.J. Hamel, L. Weaving, R.A. Ouvrier, J.A. Donald, R.A. Wevers, J. Christodoulou, H. van Bokhoven. "

Arts syndrome is caused by loss-of-function mutations in PRPS1
,"
American Journal of Human Genetics
, Vol. 81, No. 3, pp. 507-518, 2007. (
, Full paper)
J. Hehir-Kwa, M. Egmont-Petersen, I. Janssen, D. Smeets, A. Geurts van Kessel. J. Veltman. "
Genome-wide copy number profiling on high-density BAC, SNP and oligonucleotide microarrays: a platform comparison based on statistical power analysis
,"
DNA Research
, Vol. 14, No. 1, pp. 1-11, 2007. (
,
)
L. Franke, H. van Bakel, L. Fokkens, E. de Jong, M. Egmont-Petersen, C. Wijmenga. "
Reconstruction of a probabilistic human gene network, with an application for prioritizing positional candidate genes
,"
American Journal of Human Genetics
, Vol. 78 No. 6, pp. 1011-1025, 2006. (
,
)
M. Egmont-Petersen, A. Feelders, B. Baesens. "
Confidence intervals for probabilistic network classifiers
,"
Computational Statistics and Data Analysis
, Vol. 49, No. 4, pp. 998-1019, 2005. (
,
)
B. Baesens, G. Verstraeten, D. van den Poel, M. Egmont-Petersen, P. van Kenhove, J. Vanthienen. "
Bayesian network classifiers for identifying the slope of the customer lifecycle of long-life customers
,"
European Journal of Operational Research
, Vol. 156, No. 2, pp. 508-523, 2004. (
,
)
N. Archip, P.J. Erard, M. Egmont-Petersen, J.-M. Haefliger, J.-F. Germond. "
A knowledge-based approach to automatic detection of the spinal cord in CT images
,"
IEEE Transactions on Medical Imaging
, Vo. 21, No. 12, pp. 1504-1516, 2002. (
,
)
H.C. van Assen, M. Egmont-Petersen, J.H.C. Reiber. "
Accurate object localization in gray level images using the center of gravity measure; accuracy versus precision
,"
IEEE Transactions on Image Processing
, Vol. 11, No. 12, pp. 1379-1384, 2002. (
,
)
J.P. Janssen, M. Egmont-Petersen, E.A. Hendriks, M.J.T. Reinders, R.J. van der Geest, P.C.W. Hogendoorn, J.H.C. Reiber. "
Scale-invariant segmentation of dynamic contrast-enhanced perfusion MR-images with inherent scale selection
,"
Journal of Visualisation and Computer Animation
, Vol. 13, No. 1, pp. 1-19, 2002. (
,
)
M. Egmont-Petersen, D. de Ridder, H. Handels. "
Image processing with neural networks - a review
,"
Pattern Recognition
, Vol. 35, No. 10, pp. 2279-2301, 2002. (
,
,
)
A.F. Frangi, M. Egmont-Petersen, W.J. Niessen, J.H.C. Reiber, M.A. Viergever. "
Bone tumor segmentation from MR perfusion images with neural networks using multi-scale pharmacokinetic features
,"
Image and Vision Computing
, Vol. 19, No. 9-10, pp. 679-690, 2001. (
,
)
H.J. van der Woude, M. Egmont-Petersen. "
Contrast-enhanced Magnetic Resonance Imaging of Bone Marrow
,"
Seminars in Musculoskeletal Radiology
, Vol. 5, No. 1, pp. 21-33, 2001. (
)
M. Egmont-Petersen, P.C.W. Hogendoorn, R.v.d.Geest, H.A. Vrooman, H.-J.v.d. Woude, J.P. Janssen, J.L. Bloem, J.H.C. Reiber. "
Detection of areas with viable remnant tumor in postchemotherapy patients with Ewing's sarcoma by dynamic contrast-enhanced MRI using pharmacokinetic modeling

,"
Magnetic Resonance Imaging
, Vol. 15, No. 5, pp. 525-535, 2000. (
,
)
M. Egmont-Petersen, U. Schreiner, S.C. Tromp, T. Lehmann, D.W. Slaaf, T. Arts. "
Detection of leukocytes in contact with the vessel wall from
in vivo
microscope recordings using a neural network
,"
IEEE Transactions on Biomedical Engineering
, Vol. 47, No. 7, pp. 941-951, 2000. (
,
H.C. van Assen, H.A. Vrooman, M. Egmont-Petersen, G. Koning, E.L. van der Linden, B. Goedhart, J.H.C. Reiber. "
Automated calibration in vascular X-ray images using the accurate localization of catheter marker bands
,"
Investigative Radiology
, Vol. 35, No. 4, pp. 219-226, 2000. (
)
M. Egmont-Petersen, W.R.M. Dassen, J.H.C. Reiber. "
Sequential selection of discrete features for neural networks - a Bayesian approach to building a cascade
,"
Pattern Recognition Letters
, Vol. 20, No. 11-13, pp. 1439-1448, 1999. (
,
)
M. Egmont-Petersen, T. Arts. "
Recognition of radiopaque markers in X-ray images using a neural network as nonlinear filter
,"
Pattern Recognition Letters
, Vol. 20, No. 5, pp. 521-533, 1999. (
,
)
M. Egmont-Petersen, E. Pelikan. "
Detection of bone tumours in radiographs using neural networks
,"
Pattern Analysis and Applications
, Vol. 2, No. 2, pp. 172-183, 1999. (
,
)
M. Egmont-Petersen, J.L. Talmon, A. Hasman, A.W. Ambergen. "
Assessing the importance of features for multi-layer perceptrons
,"
Neural Networks
, Vol. 11, No. 4, pp. 623-635, 1998. (
,
)
M. Egmont-Petersen, J.L. Talmon, A. Hasman, "
Robustness metrics for measuring the influence of additive noise on the performance of statistical classifiers
,"
International Journal of Medical Informatics
, Vol. 46, No. 2, pp. 103-112, 1997. (
,
)
V. Karthaus, H. Thygesen, M. Egmont-Petersen, J. Talmon, J. Brender, P. McNair. "
User-requirements driven learning
,"
Computer Methods and Programs in Biomedicine
, Vol. 48, No. 1-2, pp. 39-44, 1995. (
,
)
M. Egmont-Petersen, J.L. Talmon, J. Brender, P. NcNair. "
On the quality of neural net classifiers,
"
Artificial Intelligence in Medicine
, Vol. 6, No. 5, pp. 359-381, 1994. (
,
)
J.L. Talmon, M. Egmont-Petersen. "
Inductive learning and neural networks
," (in dutch)
Klinische Fysica
, Vol. 1, pp. 17-20, 1993.

Reprints (unavailable online), please contact me:
michael * egmont-petersen.nl
(with * indicating @)

Books and book chapters:
D. de Ridder, R.P.W. Duin, M. Egmont-Petersen, L.J. van Vliet, P.W. Verbeek. "
Nonlinear image processing using Artificial Neural Networks
," In
Advances in Imaging and Electron Physics
, Vol. 126, Elsevier Science, 2003, pp. 351-450.
W.R.M. Dassen, M. Egmont-Petersen, R.G.A. Mulleneers. "
Artificial neural networks in cardiology; a review
," chapter 29, In P.E. Vardas (Ed.),
Cardiac arrhythmias, pacing and electrophysiology
, Kluwer Academic Publishers, Dordrecht, 1998, pp. 205-211. (
)
M. Egmont-Petersen.
Specification and assessment of methods supporting the development of neural networks in medicine
, Doctoral dissertation, Faculty of medicine at Maastricht University, Shaker Publishing B.V., Maastricht, 1996. (
)

Reprints (unavailable online), please contact me:
michael * egmont-petersen.nl
(with * indicating @)

Conference proceedings:
M. Egmont-Petersen. "
Feature selection by Markov Chain Monte Carlo Sampling - a Bayesian approach
," In Structural, Syntactic, and Statistical Pattern Recognition, Proceedings of the Joint IAPR Workshops SSPR 2004 and SPR 2004,
Lecture Notes in Computer Science 3138
, Eds. A. Fred et al., pp. 1034-1042, 2004. (
,
)
M. Egmont-Petersen. W. de Jonge, A. Siebes. "
Discovery of regulatory connections in microarray data
," In Proceedings of the 8th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD) 2004,
Lecture Notes in Computer Science 3202
, Eds. J.-F. Boulicaut et al., pp. 149-160, 2004. (
,
)
B. Baesens, M. Egmont-Petersen, R. Castelo, J. Vanthienen. "
Learning Bayesian network classifiers for credit scoring using Markov Chain Monte Carlo search,

" In:
Proceedings of the International Congress on Pattern Recognition
, IEEE Computer Society, Montreal, pp. 49-52, 2002.
G. Verstraeten, B. Baesens, D. van den Poel, M. Egmont-Petersen, P. van Kenhove, J. Vanthienen. "
Targeting Long-Life Customers: Towards a Segmented CRM Approach,
" In: Proceedings of the Thirty-First European Marketing Academy Conference (EMAC'2002), Braga, Portugal, 2002.
L.C. van der Gaag, C.L.M. Witteman, S. Renooij, M. Egmont-Petersen (2001). "
The effects of disregarding test-characteristics in probabilistic
M. Egmont-Petersen, P.C.W. Hogendoorn, R.J. van der Geest, J.L. Bloem, J.H.C. Reiber. "
Assessment of the influence of preoperative chemotherapy in patients with osteosarcoma by dynamic contrast-enhanced MRI using pharmacokinetic modeling

," In: H. Handels, A. Horsch, T. Lehmann, H.-P. Meinzer (Eds.),
Proceedings of Bildverarbeitung in der Medizin 2001
(Proceedings of the workshop in Lübeck on medical image processing), Springer Verlag, Berlin, pp. 399-403, 2001.
M. Egmont-Petersen, A.F. Frangi, W.J. Niessen, P.C.W. Hogendoorn, J.L. Bloem, M.A. Viergever, J.H.C. Reiber. "
Segmentation of bone tumor in MR perfusion
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